FungusTreeNetwork

fungus-tree interaction network

This data set provides information about 154 fungi sampled on 51 tree species. Composed of nodes and edges lists build based on sbm data package.

Usage

FungusTreeNetwork

Format

A list of two elements, networks and sbmResults.

networks is itself a list with the following entries:

tee_names:

(character) tree names

fungus_names:

(character) fungus names

tree_tree:

a list describing the unipartite tree_tree networks with nodes (data.frame), edges (data.frame) and type (character specifying the type of the network)

fungus_tree:

a list describing the bipartite fungus_tree networks with nodes (data.frame), edges (data.frame) and type (character)

sbmResults is a list with the following entries:

tree_tree

Results of sbm::estimateSimpleSBM applied on tree_tree data with a Poisson model.

fungus_tree

Results of sbm::estimateBipartiteSBM applied on fungus_tree data with a Bernoulli model.

Source

Vacher, Corinne, Dominique Piou, and Marie-Laure Desprez-Loustau. "Architecture of an antagonistic tree/fungus network: the asymmetric influence of past evolutionary history." PloS one 3.3 (2008): e1740.