Merge branch 'dev_Jules' into 'master'
First deployed version See merge request !2
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- README.md 24 additions, 2 deletionsREADME.md
- assets/begin_template.txt 29 additions, 0 deletionsassets/begin_template.txt
- assets/final_email_template.txt 43 additions, 0 deletionsassets/final_email_template.txt
- assets/multiqc_config.yaml 1 addition, 2 deletionsassets/multiqc_config.yaml
- assets/params.config_example 8 additions, 8 deletionsassets/params.config_example
- assets/params.yml_example 20 additions, 0 deletionsassets/params.yml_example
- bin/DTM/Readme.md 55 additions, 0 deletionsbin/DTM/Readme.md
- bin/extractInfoForDemuxStats.pl 1 addition, 0 deletionsbin/extractInfoForDemuxStats.pl
- conf/base.config 51 additions, 16 deletionsconf/base.config
- conf/functions.config 198 additions, 0 deletionsconf/functions.config
- conf/report.config 2 additions, 2 deletionsconf/report.config
- main.nf 6 additions, 0 deletionsmain.nf
- modules/local/module_core.nf 3 additions, 3 deletionsmodules/local/module_core.nf
- modules/local/module_dna.nf 2 additions, 2 deletionsmodules/local/module_dna.nf
- nextflow.config 14 additions, 5 deletionsnextflow.config
- sub-workflows/local/core_pipeline.nf 18 additions, 5 deletionssub-workflows/local/core_pipeline.nf
- sub-workflows/local/dna_qc.nf 2 additions, 1 deletionsub-workflows/local/dna_qc.nf
- workflow/illumina_qc.nf 44 additions, 49 deletionsworkflow/illumina_qc.nf
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