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Created with Raphaël 2.2.027Feb2013121110727Jan232116819Dec1816428Nov27251814721Oct181710Sep94222Aug529Jul2417May1529Apr2522Nov1713Oct525Sep181265431Aug281198231Jul28242126Jun5May27Apr26252128Mar2214973228Feb2724232120108632131Jan13Jul1218Feb17164Jan6Oct13Sep31Aug301016Jul26May11Mar12Feb5429Jan2820Nov1916Stop keeping non-rRNA fastq filesdev_Julesdev_JulesMerge branch 'dev_Jules' into 'master'V1.27.6 masterV1.27.6 masterUpdate manifest versionE.coli reference for conta has now generic nameRemove comment in codeAVITI fastq header is anonymizedtypo in mqc conf fileMultiqc fastqscreen section has tips in blockquoteMerge branch 'dev_caro' into 'master'V1.27.4V1.27.4Merge branch 'dev_Jules' into 'master'#152 forgetdev_carodev_caro#152 add text on fastq_screen sectionBetter recognition of RNA lib typeUnmapped reads are retrieve and stored in fastq filesAdd config ressources to get unmapped readsBam files are not keep anymoreHelp4MultiQC git book is now available on top of the reporttest with yml modif commentMerge branch 'dev_Jules' into 'master'V1.27.0V1.27.0Update manifest versionRemove from ngl subworkflow md5sum and readset Files creationsRemove unwantes graphs in multiQC configIgnore some error in analysis creationDeals with new elembio config file and envGroup fastq and md5 togetherUse sample list for readset creationCOPY_TO_SAVE wait NGSRG treatments completionRemove PlaGe related text in multiQC reportMerge branch 'dev_Jules' into 'master'V1.26.5V1.26.5update manifest versionGet runCode and analysisCode from ngl filesDemuxStat channel is populated all the timeReplace PlaGe logo by GeT one's in mqcChange multiqc channel organizationCreate multiqc headerNew function to get multiqc pipeline infoMultiQC have fixed and unique file nameAvoid rbin on empty dataMerge branch 'dev_Jules' into 'master'V1.26.0V1.26.0Add analysis name