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GeT-nextflow-NGL-Bi
wf-Illumina-nf
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f10db1fdf2f595be8d1ce21e667ad158754a6bc4
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V1.27.6
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Stop keeping non-rRNA fastq files
dev_Jules
dev_Jules
Merge branch 'dev_Jules' into 'master'
V1.27.6 master
V1.27.6 master
Update manifest version
E.coli reference for conta has now generic name
Remove comment in code
AVITI fastq header is anonymized
typo in mqc conf file
Multiqc fastqscreen section has tips in blockquote
Merge branch 'dev_caro' into 'master'
V1.27.4
V1.27.4
Merge branch 'dev_Jules' into 'master'
#152 forget
dev_caro
dev_caro
#152 add text on fastq_screen section
Better recognition of RNA lib type
Unmapped reads are retrieve and stored in fastq files
Add config ressources to get unmapped reads
Bam files are not keep anymore
Help4MultiQC git book is now available on top of the report
test with yml modif comment
Merge branch 'dev_Jules' into 'master'
V1.27.0
V1.27.0
Update manifest version
Remove from ngl subworkflow md5sum and readset Files creations
Remove unwantes graphs in multiQC config
Ignore some error in analysis creation
Deals with new elembio config file and env
Group fastq and md5 together
Use sample list for readset creation
COPY_TO_SAVE wait NGSRG treatments completion
Remove PlaGe related text in multiQC report
Merge branch 'dev_Jules' into 'master'
V1.26.5
V1.26.5
update manifest version
Get runCode and analysisCode from ngl files
DemuxStat channel is populated all the time
Replace PlaGe logo by GeT one's in mqc
Change multiqc channel organization
Create multiqc header
New function to get multiqc pipeline info
MultiQC have fixed and unique file name
Avoid rbin on empty data
Merge branch 'dev_Jules' into 'master'
V1.26.0
V1.26.0
Add analysis name
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