# ************** MCQR installation ************
#open an R terminal and execute the following instructions :
## try http:// if https:// URLs are not supported
# if url scheme is not supported :
# options(download.file.method = "curl")
# install bioconductor pachage requirements
source("https://bioconductor.org/biocLite.R")
biocLite("made4")
#install R modules requirements
install.packages(pkgs=c('zoo', 'mvtnorm', 'XML','multcomp','bitops','caTools','gplots','gtools','gdata','chron','stringi','stringr','reshape2','data.table', 'readODS','vcd','lme4','car','robustbase','colorspace','VIM','ade4','clValid','agricolae', 'ggplot2', 'gridExtra', 'Hmisc', 'RColorBrewer', 'plotly', 'plyr', 'dplyr','cpp11','svglite'), repos=c('http://cran.univ-paris1.fr/'))
#Finally install the latest version of MCQR
install.packages('https://sourcesup.renater.fr/frs/download.php/latestfile/1735/MCQR_v0.4.3.R', repos = NULL, type = 'source')
#if this URL is not available, please
# check instructions on our website :
# http://pappso.inra.fr/bioinfo
| Name | Last commit | Last update |
|---|---|---|
| Document | ||
| MCQR | ||
| Tools | ||
| docker_output | ||
| extdata | ||
| new_example_data | ||
| old_code | ||
| test | ||
| tuto_scenario | ||
| .Rhistory | ||
| .gitignore | ||
| Dockerfile | ||
| LICENSE | ||
| changelog.md | ||
| packages_version.csv | ||
| readme.txt |